PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016447597.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 361aa    MW: 41351.3 Da    PI: 9.7069
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016447597.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.1e-05119142123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     y C  Cg++F +++ L++H +  H
  XP_016447597.1 119 YLCRVCGRRFYTNEKLVNHFKQiH 142
                     56*****************98766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10101.7E-763118IPR029060PIN domain-like
SuperFamilySSF576671.37E-5115145No hitNo description
Gene3DG3DSA:3.30.160.601.6E-4119144IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.884119147IPR007087Zinc finger, C2H2
PROSITE patternPS000280121142IPR007087Zinc finger, C2H2
CDDcd061671.37E-13136271No hitNo description
PfamPF019365.1E-8191273IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10101.7E-7204259IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MLKRVKASTF IHAIRSYKRF CHFESKSHLG FGSLDSSVKT NVGIFWDLDN KPPKSFPPFD  60
AATKLKKAAG EFGVVRYTVA YANRHAFSYV PPLVRQQRKE RKTLNSLEKS GVVKVEEPYL  120
CRVCGRRFYT NEKLVNHFKQ IHEREHTKRL SQIESARGKM RVKLVAKYAM KMDKYKNAVR  180
DVLTPKVGYG LADELKRAGF WVRTVSDKPQ AADVALRNHL VDVMDKRMVE CVVLVSDDSD  240
FVEVLKEARL RCLKTVVVGD CNDGALKRTA DASFSWQEIM MGKAKKEAVS VVGRWKDRDV  300
LKRLEWTYDP EVEKKQYYSE VESDDSDGLF SGEDDNKDAD ASISKEDACA WWKLDSRSGH  360
D
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016447596.10.0PREDICTED: uncharacterized protein LOC107772620
RefseqXP_016447597.10.0PREDICTED: uncharacterized protein LOC107772620
RefseqXP_016447598.10.0PREDICTED: uncharacterized protein LOC107772620
TrEMBLM0ZKC80.0M0ZKC8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000026010.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-151C2H2 family protein